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Transportation and Infrastructure Minister Todd Stone speaks to the Vancouver Board of Trade March 17, 2015.Jeff Vinnick

Tim Duncan said he was barely three weeks into his new job at the Transportation Ministry in Victoria when he was ordered to delete e-mails concerning government meetings about the Highway of Tears investigation into murdered and missing women.

When he hesitated, Mr. Duncan said a ministerial assistant in Transportation Minister Todd Stone's office stepped in and deleted about a dozen e-mails from his government computer.

Mr. Duncan's allegations have set off an investigation by British Columbia's Information and Privacy Commissioner and prompted the government to announce Thursday that the ministerial assistant who deleted the e-mails has been suspended with pay.

"It is my belief that the abuse of the freedom of information process is widespread and most likely systemic within the [Premier Christy] Clark government," said the May 18 letter of complaint sent by Mr. Duncan to Privacy Commissioner Elizabeth Denham.

Ms. Denham said in a statement she has contacted Mr. Duncan and her office will launch an investigation.

The New Democrats raised the e-mail deletion issue Thursday in the legislature, accusing the government of abusing the Freedom of Information process. The Opposition also released an e-mail Mr. Duncan sent to MLA Maurine Karagianis in which he described his political experience.

"I left the cesspool that is the B.C. government in March and have returned to Calgary with no intention of ever going back," the e-mail said.

In a telephone interview from Calgary, Mr. Duncan said he was dismayed by what he experienced working for the B.C. government. He said when he raised concerns about possible abuses of the Freedom of Information process he was demoted to the research department and eventually fired.

Mr. Duncan said the episode unfolded last November when the Ministry of Transportation received a request for records relating to meetings held by ministry officials connected to the Highway of Tears files.

The 720-kilometre stretch of Highway 16 between Prince George and Prince Rupert in northern British Columbia has become known as the Highway of Tears for the disappearances and unsolved murders of 18 young women.

Mr. Duncan said he conducted a search and found more than a dozen documents, but when he called a ministerial assistant, he was told to delete the e-mails.

"I'm like, 'No, these are exactly what the FOI said we should be keeping,'" he said. "He just took my keyboard away, literally, and said, 'Hey, now you don't have to worry about it.'"

Mr. Duncan said when he raised his concerns a second time in January about deleting e-mails after a Freedom of Information request, a Liberal research director said: "It's like the West Wing. You do whatever it takes to win."

Mr. Stone said his office follows Freedom of Information rules to the letter of the law and he's not aware of any practice of deleting e-mails that are part of FOI requests.

"As a minister, I expect the staff who work in my office to adhere 100 per cent to the requirements of the applicable legislation, and I expect that to be the case each and every day," he said.

Ms. Denham has written previous reports where she's highlighted the government's slow response to Freedom of Information requests and she's called for more archiving of government e-mail records as opposed to deletions.